PoplarV1, Main, Exploration, bibRecord, 000E78

Genes and gene clusters related to genotype and drought-induced variation in saccharification potential, lignin content and wood anatomical traits in Populus nigra.

Identifieur interne : 000E78 ( Main/Exploration ); précédent : 000E77; suivant : 000E79

Genes and gene clusters related to genotype and drought-induced variation in saccharification potential, lignin content and wood anatomical traits in Populus nigra.

Auteurs : Henning Wildhagen [Allemagne] ; Shanty Paul [Allemagne] ; Mike Allwright [Royaume-Uni] ; Hazel K. Smith [Royaume-Uni] ; Marta Malinowska [Royaume-Uni] ; Sabine K. Schnabel [Pays-Bas] ; M João Paulo [Pays-Bas] ; Federica Cattonaro [Italie] ; Vera Vendramin [Italie] ; Simone Scalabrin [Italie] ; Dennis Janz [Allemagne] ; Cyril Douthe [Espagne] ; Oliver Brendel [France] ; Cyril Buré [France] ; David Cohen [France] ; Irène Hummel [France] ; Didier Le Thiec [France] ; Fred Van Eeuwijk [Pays-Bas] ; Joost J B. Keurentjes [Pays-Bas] ; Jaume Flexas [Espagne] ; Michele Morgante [Italie] ; Paul Robson [Royaume-Uni] ; Marie-Béatrice Bogeat-Triboulot [France] ; Gail Taylor [Royaume-Uni] ; Andrea Polle [Allemagne]

Source :

Tree physiology [ 1758-4469 ] ; 2018.

RBID : pubmed:28541580

Descripteurs français

KwdFr :
- Bois (anatomie et histologie), Bois (métabolisme), Expression des gènes (MeSH), Famille multigénique (MeSH), Gènes de plante (MeSH), Génotype (MeSH), Hydrolyse (MeSH), Lignine (métabolisme), Polyosides (métabolisme), Populus (anatomie et histologie), Populus (génétique), Populus (métabolisme), Sécheresses (MeSH).
MESH :
- anatomie et histologie : Bois, Populus.
- génétique : Populus.
- métabolisme : Bois, Lignine, Polyosides, Populus.
- Expression des gènes, Famille multigénique, Gènes de plante, Génotype, Hydrolyse, Sécheresses.

English descriptors

KwdEn :
- Droughts (MeSH), Gene Expression (MeSH), Genes, Plant (MeSH), Genotype (MeSH), Hydrolysis (MeSH), Lignin (metabolism), Multigene Family (MeSH), Polysaccharides (metabolism), Populus (anatomy & histology), Populus (genetics), Populus (metabolism), Wood (anatomy & histology), Wood (metabolism).
MESH :
- chemical , metabolism : Lignin, Polysaccharides.
- anatomy & histology : Populus, Wood.
- genetics : Populus.
- metabolism : Populus, Wood.
- Droughts, Gene Expression, Genes, Plant, Genotype, Hydrolysis, Multigene Family.

Abstract

Wood is a renewable resource that can be employed for the production of second generation biofuels by enzymatic saccharification and subsequent fermentation. Knowledge on how the saccharification potential is affected by genotype-related variation of wood traits and drought is scarce. Here, we used three Populus nigra L. genotypes from habitats differing in water availability to (i) investigate the relationships between wood anatomy, lignin content and saccharification and (ii) identify genes and co-expressed gene clusters related to genotype and drought-induced variation in wood traits and saccharification potential. The three poplar genotypes differed in wood anatomy, lignin content and saccharification potential. Drought resulted in reduced cambial activity, decreased vessel and fiber lumina, and increased the saccharification potential. The saccharification potential was unrelated to lignin content as well as to most wood anatomical traits. RNA sequencing of the developing xylem revealed that 1.5% of the analyzed genes were differentially expressed in response to drought, while 67% differed among the genotypes. Weighted gene correlation network analysis identified modules of co-expressed genes correlated with saccharification potential. These modules were enriched in gene ontology terms related to cell wall polysaccharide biosynthesis and modification and vesicle transport, but not to lignin biosynthesis. Among the most strongly saccharification-correlated genes, those with regulatory functions, especially kinases, were prominent. We further identified transcription factors whose transcript abundances differed among genotypes, and which were co-regulated with genes for biosynthesis and modifications of hemicelluloses and pectin. Overall, our study suggests that the regulation of pectin and hemicellulose metabolism is a promising target for improving wood quality of second generation bioenergy crops. The causal relationship of the identified genes and pathways with saccharification potential needs to be validated in further experiments.

DOI: 10.1093/treephys/tpx054
PubMed: 28541580
PubMed Central: PMC5982782

Affiliations:

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<author><name sortKey="Cattonaro, Federica" sort="Cattonaro, Federica" uniqKey="Cattonaro F" first="Federica" last="Cattonaro">Federica Cattonaro</name>
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<author><name sortKey="Vendramin, Vera" sort="Vendramin, Vera" uniqKey="Vendramin V" first="Vera" last="Vendramin">Vera Vendramin</name>
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<author><name sortKey="Cohen, David" sort="Cohen, David" uniqKey="Cohen D" first="David" last="Cohen">David Cohen</name>
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<author><name sortKey="Keurentjes, Joost J B" sort="Keurentjes, Joost J B" uniqKey="Keurentjes J" first="Joost J B" last="Keurentjes">Joost J B. Keurentjes</name>
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<author><name sortKey="Flexas, Jaume" sort="Flexas, Jaume" uniqKey="Flexas J" first="Jaume" last="Flexas">Jaume Flexas</name>
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<author><name sortKey="Morgante, Michele" sort="Morgante, Michele" uniqKey="Morgante M" first="Michele" last="Morgante">Michele Morgante</name>
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<wicri:regionArea>Università Di Udine, Istituto di Genomica Applicata, via Jacopo Linussio 51, 33100 Udine</wicri:regionArea>
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<author><name sortKey="Bogeat Triboulot, Marie Beatrice" sort="Bogeat Triboulot, Marie Beatrice" uniqKey="Bogeat Triboulot M" first="Marie-Béatrice" last="Bogeat-Triboulot">Marie-Béatrice Bogeat-Triboulot</name>
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<author><name sortKey="Taylor, Gail" sort="Taylor, Gail" uniqKey="Taylor G" first="Gail" last="Taylor">Gail Taylor</name>
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<country xml:lang="fr">Allemagne</country>
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<author><name sortKey="Smith, Hazel K" sort="Smith, Hazel K" uniqKey="Smith H" first="Hazel K" last="Smith">Hazel K. Smith</name>
<affiliation wicri:level="1"><nlm:affiliation>Center for Biological Sciences, University of Southampton, University Road, Southampton SO17 1BJ, UK.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Center for Biological Sciences, University of Southampton, University Road, Southampton SO17 1BJ</wicri:regionArea>
<wicri:noRegion>Southampton SO17 1BJ</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Malinowska, Marta" sort="Malinowska, Marta" uniqKey="Malinowska M" first="Marta" last="Malinowska">Marta Malinowska</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Biological, Environmental & Rural Sciences (IBERS), Aberystwyth University, Gogerddan, Aberystwyth, SY233EE, UK.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Institute of Biological, Environmental & Rural Sciences (IBERS), Aberystwyth University, Gogerddan, Aberystwyth, SY233EE</wicri:regionArea>
<wicri:noRegion>SY233EE</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Schnabel, Sabine K" sort="Schnabel, Sabine K" uniqKey="Schnabel S" first="Sabine K" last="Schnabel">Sabine K. Schnabel</name>
<affiliation wicri:level="1"><nlm:affiliation>Biometris, Wageningen University and Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands.</nlm:affiliation>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Biometris, Wageningen University and Research, Droevendaalsesteeg 1, 6708 PB Wageningen</wicri:regionArea>
<wicri:noRegion>6708 PB Wageningen</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Paulo, M Joao" sort="Paulo, M Joao" uniqKey="Paulo M" first="M João" last="Paulo">M João Paulo</name>
<affiliation wicri:level="1"><nlm:affiliation>Biometris, Wageningen University and Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands.</nlm:affiliation>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Biometris, Wageningen University and Research, Droevendaalsesteeg 1, 6708 PB Wageningen</wicri:regionArea>
<wicri:noRegion>6708 PB Wageningen</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Cattonaro, Federica" sort="Cattonaro, Federica" uniqKey="Cattonaro F" first="Federica" last="Cattonaro">Federica Cattonaro</name>
<affiliation wicri:level="1"><nlm:affiliation>IGA Technology Services, via Jacopo Linussio 51, 33100 Udine, Italy.</nlm:affiliation>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>IGA Technology Services, via Jacopo Linussio 51, 33100 Udine</wicri:regionArea>
<wicri:noRegion>33100 Udine</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Vendramin, Vera" sort="Vendramin, Vera" uniqKey="Vendramin V" first="Vera" last="Vendramin">Vera Vendramin</name>
<affiliation wicri:level="1"><nlm:affiliation>IGA Technology Services, via Jacopo Linussio 51, 33100 Udine, Italy.</nlm:affiliation>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>IGA Technology Services, via Jacopo Linussio 51, 33100 Udine</wicri:regionArea>
<wicri:noRegion>33100 Udine</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Scalabrin, Simone" sort="Scalabrin, Simone" uniqKey="Scalabrin S" first="Simone" last="Scalabrin">Simone Scalabrin</name>
<affiliation wicri:level="1"><nlm:affiliation>IGA Technology Services, via Jacopo Linussio 51, 33100 Udine, Italy.</nlm:affiliation>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>IGA Technology Services, via Jacopo Linussio 51, 33100 Udine</wicri:regionArea>
<wicri:noRegion>33100 Udine</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Janz, Dennis" sort="Janz, Dennis" uniqKey="Janz D" first="Dennis" last="Janz">Dennis Janz</name>
<affiliation wicri:level="3"><nlm:affiliation>Forest Botany and Tree Physiology, Georg-August University of Goettingen, Büsgenweg 2, 37077 Göttingen, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Forest Botany and Tree Physiology, Georg-August University of Goettingen, Büsgenweg 2, 37077 Göttingen</wicri:regionArea>
<placeName><region type="land" nuts="2">Basse-Saxe</region>
<settlement type="city">Göttingen</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Douthe, Cyril" sort="Douthe, Cyril" uniqKey="Douthe C" first="Cyril" last="Douthe">Cyril Douthe</name>
<affiliation wicri:level="1"><nlm:affiliation>Universidad de les Illes Balears, Carretera de Valldemossa Km 7.5, 07122 Palma de Mallorca, Illes Balears, Spain.</nlm:affiliation>
<country xml:lang="fr">Espagne</country>
<wicri:regionArea>Universidad de les Illes Balears, Carretera de Valldemossa Km 7.5, 07122 Palma de Mallorca, Illes Balears</wicri:regionArea>
<wicri:noRegion>Illes Balears</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Brendel, Oliver" sort="Brendel, Oliver" uniqKey="Brendel O" first="Oliver" last="Brendel">Oliver Brendel</name>
<affiliation wicri:level="4"><nlm:affiliation>EEF, INRA, Université de Lorraine, rue d'Amance, 54280 Champenoux, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>EEF, INRA, Université de Lorraine, rue d'Amance, 54280 Champenoux</wicri:regionArea>
<placeName><region type="region" nuts="2">Grand Est</region>
<region type="old region" nuts="2">Lorraine (région)</region>
<settlement type="city">Champenoux</settlement>
</placeName>
<orgName type="university">Université de Lorraine</orgName>
</affiliation>
</author>
<author><name sortKey="Bure, Cyril" sort="Bure, Cyril" uniqKey="Bure C" first="Cyril" last="Buré">Cyril Buré</name>
<affiliation wicri:level="4"><nlm:affiliation>EEF, INRA, Université de Lorraine, rue d'Amance, 54280 Champenoux, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>EEF, INRA, Université de Lorraine, rue d'Amance, 54280 Champenoux</wicri:regionArea>
<placeName><region type="region" nuts="2">Grand Est</region>
<region type="old region" nuts="2">Lorraine (région)</region>
<settlement type="city">Champenoux</settlement>
</placeName>
<orgName type="university">Université de Lorraine</orgName>
</affiliation>
</author>
<author><name sortKey="Cohen, David" sort="Cohen, David" uniqKey="Cohen D" first="David" last="Cohen">David Cohen</name>
<affiliation wicri:level="4"><nlm:affiliation>EEF, INRA, Université de Lorraine, rue d'Amance, 54280 Champenoux, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>EEF, INRA, Université de Lorraine, rue d'Amance, 54280 Champenoux</wicri:regionArea>
<placeName><region type="region" nuts="2">Grand Est</region>
<region type="old region" nuts="2">Lorraine (région)</region>
<settlement type="city">Champenoux</settlement>
</placeName>
<orgName type="university">Université de Lorraine</orgName>
</affiliation>
</author>
<author><name sortKey="Hummel, Irene" sort="Hummel, Irene" uniqKey="Hummel I" first="Irène" last="Hummel">Irène Hummel</name>
<affiliation wicri:level="4"><nlm:affiliation>EEF, INRA, Université de Lorraine, rue d'Amance, 54280 Champenoux, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>EEF, INRA, Université de Lorraine, rue d'Amance, 54280 Champenoux</wicri:regionArea>
<placeName><region type="region" nuts="2">Grand Est</region>
<region type="old region" nuts="2">Lorraine (région)</region>
<settlement type="city">Champenoux</settlement>
</placeName>
<orgName type="university">Université de Lorraine</orgName>
</affiliation>
</author>
<author><name sortKey="Le Thiec, Didier" sort="Le Thiec, Didier" uniqKey="Le Thiec D" first="Didier" last="Le Thiec">Didier Le Thiec</name>
<affiliation wicri:level="4"><nlm:affiliation>EEF, INRA, Université de Lorraine, rue d'Amance, 54280 Champenoux, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>EEF, INRA, Université de Lorraine, rue d'Amance, 54280 Champenoux</wicri:regionArea>
<placeName><region type="region" nuts="2">Grand Est</region>
<region type="old region" nuts="2">Lorraine (région)</region>
<settlement type="city">Champenoux</settlement>
</placeName>
<orgName type="university">Université de Lorraine</orgName>
</affiliation>
</author>
<author><name sortKey="Van Eeuwijk, Fred" sort="Van Eeuwijk, Fred" uniqKey="Van Eeuwijk F" first="Fred" last="Van Eeuwijk">Fred Van Eeuwijk</name>
<affiliation wicri:level="1"><nlm:affiliation>Biometris, Wageningen University and Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands.</nlm:affiliation>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Biometris, Wageningen University and Research, Droevendaalsesteeg 1, 6708 PB Wageningen</wicri:regionArea>
<wicri:noRegion>6708 PB Wageningen</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Keurentjes, Joost J B" sort="Keurentjes, Joost J B" uniqKey="Keurentjes J" first="Joost J B" last="Keurentjes">Joost J B. Keurentjes</name>
<affiliation wicri:level="1"><nlm:affiliation>Laboratory of Genetics, Wageningen University and Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands.</nlm:affiliation>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Genetics, Wageningen University and Research, Droevendaalsesteeg 1, 6708 PB Wageningen</wicri:regionArea>
<wicri:noRegion>6708 PB Wageningen</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Flexas, Jaume" sort="Flexas, Jaume" uniqKey="Flexas J" first="Jaume" last="Flexas">Jaume Flexas</name>
<affiliation wicri:level="1"><nlm:affiliation>Universidad de les Illes Balears, Carretera de Valldemossa Km 7.5, 07122 Palma de Mallorca, Illes Balears, Spain.</nlm:affiliation>
<country xml:lang="fr">Espagne</country>
<wicri:regionArea>Universidad de les Illes Balears, Carretera de Valldemossa Km 7.5, 07122 Palma de Mallorca, Illes Balears</wicri:regionArea>
<wicri:noRegion>Illes Balears</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Morgante, Michele" sort="Morgante, Michele" uniqKey="Morgante M" first="Michele" last="Morgante">Michele Morgante</name>
<affiliation wicri:level="1"><nlm:affiliation>Università Di Udine, Istituto di Genomica Applicata, via Jacopo Linussio 51, 33100 Udine, Italy.</nlm:affiliation>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>Università Di Udine, Istituto di Genomica Applicata, via Jacopo Linussio 51, 33100 Udine</wicri:regionArea>
<wicri:noRegion>33100 Udine</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Robson, Paul" sort="Robson, Paul" uniqKey="Robson P" first="Paul" last="Robson">Paul Robson</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Biological, Environmental & Rural Sciences (IBERS), Aberystwyth University, Gogerddan, Aberystwyth, SY233EE, UK.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Institute of Biological, Environmental & Rural Sciences (IBERS), Aberystwyth University, Gogerddan, Aberystwyth, SY233EE</wicri:regionArea>
<wicri:noRegion>SY233EE</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Bogeat Triboulot, Marie Beatrice" sort="Bogeat Triboulot, Marie Beatrice" uniqKey="Bogeat Triboulot M" first="Marie-Béatrice" last="Bogeat-Triboulot">Marie-Béatrice Bogeat-Triboulot</name>
<affiliation wicri:level="4"><nlm:affiliation>EEF, INRA, Université de Lorraine, rue d'Amance, 54280 Champenoux, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>EEF, INRA, Université de Lorraine, rue d'Amance, 54280 Champenoux</wicri:regionArea>
<placeName><region type="region" nuts="2">Grand Est</region>
<region type="old region" nuts="2">Lorraine (région)</region>
<settlement type="city">Champenoux</settlement>
</placeName>
<orgName type="university">Université de Lorraine</orgName>
</affiliation>
</author>
<author><name sortKey="Taylor, Gail" sort="Taylor, Gail" uniqKey="Taylor G" first="Gail" last="Taylor">Gail Taylor</name>
<affiliation wicri:level="1"><nlm:affiliation>Center for Biological Sciences, University of Southampton, University Road, Southampton SO17 1BJ, UK.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Center for Biological Sciences, University of Southampton, University Road, Southampton SO17 1BJ</wicri:regionArea>
<wicri:noRegion>Southampton SO17 1BJ</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Polle, Andrea" sort="Polle, Andrea" uniqKey="Polle A" first="Andrea" last="Polle">Andrea Polle</name>
<affiliation wicri:level="3"><nlm:affiliation>Forest Botany and Tree Physiology, Georg-August University of Goettingen, Büsgenweg 2, 37077 Göttingen, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Forest Botany and Tree Physiology, Georg-August University of Goettingen, Büsgenweg 2, 37077 Göttingen</wicri:regionArea>
<placeName><region type="land" nuts="2">Basse-Saxe</region>
<settlement type="city">Göttingen</settlement>
</placeName>
</affiliation>
</author>
</analytic>
<series><title level="j">Tree physiology</title>
<idno type="eISSN">1758-4469</idno>
<imprint><date when="2018" type="published">2018</date>
</imprint>
</series>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Droughts (MeSH)</term>
<term>Gene Expression (MeSH)</term>
<term>Genes, Plant (MeSH)</term>
<term>Genotype (MeSH)</term>
<term>Hydrolysis (MeSH)</term>
<term>Lignin (metabolism)</term>
<term>Multigene Family (MeSH)</term>
<term>Polysaccharides (metabolism)</term>
<term>Populus (anatomy & histology)</term>
<term>Populus (genetics)</term>
<term>Populus (metabolism)</term>
<term>Wood (anatomy & histology)</term>
<term>Wood (metabolism)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Bois (anatomie et histologie)</term>
<term>Bois (métabolisme)</term>
<term>Expression des gènes (MeSH)</term>
<term>Famille multigénique (MeSH)</term>
<term>Gènes de plante (MeSH)</term>
<term>Génotype (MeSH)</term>
<term>Hydrolyse (MeSH)</term>
<term>Lignine (métabolisme)</term>
<term>Polyosides (métabolisme)</term>
<term>Populus (anatomie et histologie)</term>
<term>Populus (génétique)</term>
<term>Populus (métabolisme)</term>
<term>Sécheresses (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Lignin</term>
<term>Polysaccharides</term>
</keywords>
<keywords scheme="MESH" qualifier="anatomie et histologie" xml:lang="fr"><term>Bois</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="anatomy & histology" xml:lang="en"><term>Populus</term>
<term>Wood</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Populus</term>
<term>Wood</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Bois</term>
<term>Lignine</term>
<term>Polyosides</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Droughts</term>
<term>Gene Expression</term>
<term>Genes, Plant</term>
<term>Genotype</term>
<term>Hydrolysis</term>
<term>Multigene Family</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Expression des gènes</term>
<term>Famille multigénique</term>
<term>Gènes de plante</term>
<term>Génotype</term>
<term>Hydrolyse</term>
<term>Sécheresses</term>
</keywords>
</textClass>
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</teiHeader>
<front><div type="abstract" xml:lang="en">Wood is a renewable resource that can be employed for the production of second generation biofuels by enzymatic saccharification and subsequent fermentation. Knowledge on how the saccharification potential is affected by genotype-related variation of wood traits and drought is scarce. Here, we used three Populus nigra L. genotypes from habitats differing in water availability to (i) investigate the relationships between wood anatomy, lignin content and saccharification and (ii) identify genes and co-expressed gene clusters related to genotype and drought-induced variation in wood traits and saccharification potential. The three poplar genotypes differed in wood anatomy, lignin content and saccharification potential. Drought resulted in reduced cambial activity, decreased vessel and fiber lumina, and increased the saccharification potential. The saccharification potential was unrelated to lignin content as well as to most wood anatomical traits. RNA sequencing of the developing xylem revealed that 1.5% of the analyzed genes were differentially expressed in response to drought, while 67% differed among the genotypes. Weighted gene correlation network analysis identified modules of co-expressed genes correlated with saccharification potential. These modules were enriched in gene ontology terms related to cell wall polysaccharide biosynthesis and modification and vesicle transport, but not to lignin biosynthesis. Among the most strongly saccharification-correlated genes, those with regulatory functions, especially kinases, were prominent. We further identified transcription factors whose transcript abundances differed among genotypes, and which were co-regulated with genes for biosynthesis and modifications of hemicelluloses and pectin. Overall, our study suggests that the regulation of pectin and hemicellulose metabolism is a promising target for improving wood quality of second generation bioenergy crops. The causal relationship of the identified genes and pathways with saccharification potential needs to be validated in further experiments.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">28541580</PMID>
<DateCompleted><Year>2018</Year>
<Month>10</Month>
<Day>24</Day>
</DateCompleted>
<DateRevised><Year>2018</Year>
<Month>11</Month>
<Day>13</Day>
</DateRevised>
<Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1758-4469</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>38</Volume>
<Issue>3</Issue>
<PubDate><Year>2018</Year>
<Month>03</Month>
<Day>01</Day>
</PubDate>
</JournalIssue>
<Title>Tree physiology</Title>
<ISOAbbreviation>Tree Physiol</ISOAbbreviation>
</Journal>
<ArticleTitle>Genes and gene clusters related to genotype and drought-induced variation in saccharification potential, lignin content and wood anatomical traits in Populus nigra.</ArticleTitle>
<Pagination><MedlinePgn>320-339</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1093/treephys/tpx054</ELocationID>
<Abstract><AbstractText>Wood is a renewable resource that can be employed for the production of second generation biofuels by enzymatic saccharification and subsequent fermentation. Knowledge on how the saccharification potential is affected by genotype-related variation of wood traits and drought is scarce. Here, we used three Populus nigra L. genotypes from habitats differing in water availability to (i) investigate the relationships between wood anatomy, lignin content and saccharification and (ii) identify genes and co-expressed gene clusters related to genotype and drought-induced variation in wood traits and saccharification potential. The three poplar genotypes differed in wood anatomy, lignin content and saccharification potential. Drought resulted in reduced cambial activity, decreased vessel and fiber lumina, and increased the saccharification potential. The saccharification potential was unrelated to lignin content as well as to most wood anatomical traits. RNA sequencing of the developing xylem revealed that 1.5% of the analyzed genes were differentially expressed in response to drought, while 67% differed among the genotypes. Weighted gene correlation network analysis identified modules of co-expressed genes correlated with saccharification potential. These modules were enriched in gene ontology terms related to cell wall polysaccharide biosynthesis and modification and vesicle transport, but not to lignin biosynthesis. Among the most strongly saccharification-correlated genes, those with regulatory functions, especially kinases, were prominent. We further identified transcription factors whose transcript abundances differed among genotypes, and which were co-regulated with genes for biosynthesis and modifications of hemicelluloses and pectin. Overall, our study suggests that the regulation of pectin and hemicellulose metabolism is a promising target for improving wood quality of second generation bioenergy crops. The causal relationship of the identified genes and pathways with saccharification potential needs to be validated in further experiments.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Wildhagen</LastName>
<ForeName>Henning</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>Forest Botany and Tree Physiology, Georg-August University of Goettingen, Büsgenweg 2, 37077 Göttingen, Germany.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>HAWK University of Applied Sciences and Arts, Faculty of Resource Management, Büsgenweg 1a, 37077 Göttingen, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Paul</LastName>
<ForeName>Shanty</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>Forest Botany and Tree Physiology, Georg-August University of Goettingen, Büsgenweg 2, 37077 Göttingen, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Allwright</LastName>
<ForeName>Mike</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Center for Biological Sciences, University of Southampton, University Road, Southampton SO17 1BJ, UK.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Smith</LastName>
<ForeName>Hazel K</ForeName>
<Initials>HK</Initials>
<AffiliationInfo><Affiliation>Center for Biological Sciences, University of Southampton, University Road, Southampton SO17 1BJ, UK.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Malinowska</LastName>
<ForeName>Marta</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Institute of Biological, Environmental & Rural Sciences (IBERS), Aberystwyth University, Gogerddan, Aberystwyth, SY233EE, UK.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Schnabel</LastName>
<ForeName>Sabine K</ForeName>
<Initials>SK</Initials>
<AffiliationInfo><Affiliation>Biometris, Wageningen University and Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Paulo</LastName>
<ForeName>M João</ForeName>
<Initials>MJ</Initials>
<AffiliationInfo><Affiliation>Biometris, Wageningen University and Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Cattonaro</LastName>
<ForeName>Federica</ForeName>
<Initials>F</Initials>
<AffiliationInfo><Affiliation>IGA Technology Services, via Jacopo Linussio 51, 33100 Udine, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Vendramin</LastName>
<ForeName>Vera</ForeName>
<Initials>V</Initials>
<AffiliationInfo><Affiliation>IGA Technology Services, via Jacopo Linussio 51, 33100 Udine, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Scalabrin</LastName>
<ForeName>Simone</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>IGA Technology Services, via Jacopo Linussio 51, 33100 Udine, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Janz</LastName>
<ForeName>Dennis</ForeName>
<Initials>D</Initials>
<AffiliationInfo><Affiliation>Forest Botany and Tree Physiology, Georg-August University of Goettingen, Büsgenweg 2, 37077 Göttingen, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Douthe</LastName>
<ForeName>Cyril</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>Universidad de les Illes Balears, Carretera de Valldemossa Km 7.5, 07122 Palma de Mallorca, Illes Balears, Spain.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Brendel</LastName>
<ForeName>Oliver</ForeName>
<Initials>O</Initials>
<AffiliationInfo><Affiliation>EEF, INRA, Université de Lorraine, rue d'Amance, 54280 Champenoux, France.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Buré</LastName>
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   |texte=   Genes and gene clusters related to genotype and drought-induced variation in saccharification potential, lignin content and wood anatomical traits in Populus nigra.
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Genes and gene clusters related to genotype and drought-induced variation in saccharification potential, lignin content and wood anatomical traits in Populus nigra.

Genes and gene clusters related to genotype and drought-induced variation in saccharification potential, lignin content and wood anatomical traits in Populus nigra.

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